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maxquant proteomics analysis thermo .raw  (Thermo Fisher)


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    Thermo Fisher maxquant proteomics analysis thermo .raw
    Maxquant Proteomics Analysis Thermo .Raw, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/maxquant+analysis/maxquant+proteomics+analysis+thermo++raw/pmc07191556-926-41-40
    Average 90 stars, based on 1 article reviews
    maxquant proteomics analysis thermo .raw - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Cell Culture:

    Article Title: Quantitative analysis of global protein lysine methylation by mass spectrometry
    Article Snippet: Reagents Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC .. Incubator for cell culture Cell culture supplies (e.g. flasks, trypsin, PBS) Sonicator Centrifuge Tubes Cuvettes Spectrophotometer Heating block Nanodrop Magnetic rack Desalting cartridges Speed-vac C18 stage tips LC-MS/MS system (e.g. Dionex UltiMate 3000 in line with Thermo QE-HF) Software for data analysis (e.g. MaxQuant or ProteomeDiscoverer (Thermo)) .. Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC

    Spectrophotometry:

    Article Title: Quantitative analysis of global protein lysine methylation by mass spectrometry
    Article Snippet: Reagents Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC .. Incubator for cell culture Cell culture supplies (e.g. flasks, trypsin, PBS) Sonicator Centrifuge Tubes Cuvettes Spectrophotometer Heating block Nanodrop Magnetic rack Desalting cartridges Speed-vac C18 stage tips LC-MS/MS system (e.g. Dionex UltiMate 3000 in line with Thermo QE-HF) Software for data analysis (e.g. MaxQuant or ProteomeDiscoverer (Thermo)) .. Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC

    Blocking Assay:

    Article Title: Quantitative analysis of global protein lysine methylation by mass spectrometry
    Article Snippet: Reagents Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC .. Incubator for cell culture Cell culture supplies (e.g. flasks, trypsin, PBS) Sonicator Centrifuge Tubes Cuvettes Spectrophotometer Heating block Nanodrop Magnetic rack Desalting cartridges Speed-vac C18 stage tips LC-MS/MS system (e.g. Dionex UltiMate 3000 in line with Thermo QE-HF) Software for data analysis (e.g. MaxQuant or ProteomeDiscoverer (Thermo)) .. Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC

    Software:

    Article Title: Quantitative analysis of global protein lysine methylation by mass spectrometry
    Article Snippet: Reagents Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC .. Incubator for cell culture Cell culture supplies (e.g. flasks, trypsin, PBS) Sonicator Centrifuge Tubes Cuvettes Spectrophotometer Heating block Nanodrop Magnetic rack Desalting cartridges Speed-vac C18 stage tips LC-MS/MS system (e.g. Dionex UltiMate 3000 in line with Thermo QE-HF) Software for data analysis (e.g. MaxQuant or ProteomeDiscoverer (Thermo)) .. Cells Growth medium (e.g. DMEM with 1x Pen/Strep and 10% FBS) Proline, dissolve at 110 mg/ml (955 mM) in sterile PBS for 1000x stock Light L-arginine (Arg0, Sigma A8094), dissolve at 66.3 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 4 L-arginine HCl (Arg10, Silantes 201604102) dissolve at 84 mg/ml in sterile PBS for 1000x stock Light L-lysine HCl (Lys0, Sigma L8662), dissolve at 139.9 mg/ml in sterile PBS for 1000x stock Heavy 13 C 6 , 15 N 2 L-lysine HCl (Lys8, Silantes 211604102), dissolve at 146 mg/ml in sterile PBS for 1000x stock Dialyzed FBS SILAC base DMEM (DMEM − arginine − lysine + 10% dialyzed FBS + 1x Penicillin/Streptomycin + 110 mg/L proline) Light SILAC medium (SILAC base DMEM + 139.9 mg/L Lys0 + 66.3 mg/L Arg0) Heavy SILAC medium (SILAC base DMEM + 146 mg/L Lys8 + 84 mg/L Arg10) Cell lysis buffer (8M urea, 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8), supplement with protease inhibitors immediately prior to use Protein concentration assay (e.g. Bradford reagents) Dithiothreitol Iodoacetamide 50 mM NH 4 HCO 3 or 50 mM Tris HCl, pH 8 Trypsin, sequencing-grade Trifluoroacetic acid (TFA) Desalting buffers (acetonitrile, 50% acetonitrile / 0.1% TFA, 0.1% TFA) Phosphate-buffered saline (PBS) Sodium phosphate, dibasic (100 mg/ml, 373 mM) Protein A beads Anti-Kme1 antibodies Anti-Kme2 antibodies High salt PBS (PBS with additional 0.8 M NaCl) C18 stage tip buffers (methanol, 0.1% TFA, 50% acetonitrile / 0.1% formic acid) LC Solvent A (0.1% formic acid in water) LC Solvent B (80% acetonitrile in water with 0.1% formic acid) Analytical C18 columns for nano-LC

    other:

    Article Title: Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.
    Article Snippet: Interleukin-10 (IL-10) is an anti-inflammatory cytokine that is active as a swapped domain dimer and is used in bacterial therapy of gut inflammation.. IL-10 can be used as treatment of a wide range of pulmonary diseases.. Here we have developed a non-pathogenic chassis (CV8) of the human lung bacterium Mycoplasma pneumoniae (MPN) to treat lung diseases.

    Article Title: PANAMA-enabled high-sensitivity dual nanoflow LC-MS metabolomics and proteomics analysis
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Biological samples Human plasma standard SRM1950 NIST Cat#1950 Chemicals, peptides, and recombinant proteins HLB SPE cartridges Waters N/A N’N-Dimethylformamide ThermoFisher Cat#AAA13547AK Polyacrylonitrile Sigma-Aldrich N/A Chromabond sorbent Macherey Nagel Cat#730661 Critical commercial assays Tandem Mass Tag (TMT) systems ThermoFisher Cat#PIA34808 Sep-Pak C18 3 cc Vac Cartridges Waters Cat#WAT054945 PierceTM Quantitative Peptide Assays ThermoFisher Cat#PI23275 Deposited data Proteomics This paper https://doi.org/10.5281/zenodo.11081387 Mass spectrometry raw files This paper MassIVE: MSV000091911 (https://doi.org/10.25345/C5GX4548D) Experimental models: Cell lines Human breast cancer-derived cell line MDA-MB-231 American Type Culture Collection (ATCC) N/A Software and algorithms MS-DIAL (V4.8) Fiehn Lab18 http://prime.psc.riken.jp/compms/msdial/main.html MaxQuant (V1.6) Max-Planck Institute for Biochemistry31 https://www.maxquant.org/ MetaboAnalyst (V5.0) McGill University32 https://genap.metaboanalyst.ca/MetaboAnalyst/ OmicsNotebook Emili Lab33 https://github.com/cnsb-boston/Omics_Notebook KEGG database Kanehisa et al.34 https://doi.org/10.1093/nar/gkv1070 Gene Ontology (GO) database GO Consortium35 https://doi.org/10.1093/nar/gkaa1113 Other Solid phase micro-extraction autosampler Professional Analytical Systems (PAS) Technology (Magdala, Germany) N/A EASY-nLC 1200 HPLC system Thermo Scientific N/A Orbitrap HF mass spectrometer Thermo Scientific N/A

    Article Title: Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis
    Article Snippet: Software and code Policy information about availability of computer code Data collection Thermo Xcalibur 3.0.63 Data analysis Maxquant version 1.6.1.0; Perseus version 1.6.1.1; Cytoscape version 3.6.1 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Extraction:

    Article Title: Discovery of potential plasma protein biomarkers for acute myocardial infarction via proteomics
    Article Snippet: All data collected were carried out based on the platform of Xcalibur (Thermo Fisher Scientific, San Jose, CA). .. Database search and quantitative information extraction The original file was generated using a MaxQuant mass spectrometry (1.3.0.5 Thermo Fisher Scientific, San Jose, CA) database search. ..

    Generated:

    Article Title: Discovery of potential plasma protein biomarkers for acute myocardial infarction via proteomics
    Article Snippet: All data collected were carried out based on the platform of Xcalibur (Thermo Fisher Scientific, San Jose, CA). .. Database search and quantitative information extraction The original file was generated using a MaxQuant mass spectrometry (1.3.0.5 Thermo Fisher Scientific, San Jose, CA) database search. ..

    Mass Spectrometry:

    Article Title: Discovery of potential plasma protein biomarkers for acute myocardial infarction via proteomics
    Article Snippet: All data collected were carried out based on the platform of Xcalibur (Thermo Fisher Scientific, San Jose, CA). .. Database search and quantitative information extraction The original file was generated using a MaxQuant mass spectrometry (1.3.0.5 Thermo Fisher Scientific, San Jose, CA) database search. ..

    Sequencing:

    Article Title: The propofol binding sites of prokaryotic voltage-gated sodium channels
    Article Snippet: .. Spectral analysis was conducted using Maxquant (Thermo Scientific) to search b and y ions against the sequence containing NaChBac and NavMs. ..

    Article Title: Binding Sites and the Mechanism of Action of Propofol and a Photoreactive Analogue in Prokaryotic Voltage-Gated Sodium Channels.
    Article Snippet: Propofol, one of the most commonly used intravenous general anesthetics, modulates neuronal function by interacting with ion channels.. The mechanisms that link propofol binding to the modulation of distinct ion channel states, however, are not understood.. To tackle this problem, we investigated the prokaryotic ancestors of eukaryotic voltage-gated Na channels (Navs) using unbiased photoaffinity labeling (PAL) with a diazirine derivative of propofol (AziPm), electrophysiological methods, and mutagenesis.



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    Shotgun <t>proteomics</t> to compare saliva and CSF and correlation analysis of differentially expressed genes in saliva. A) GO Biological pathways for salivary proteins. B) Number of shared proteins between saliva and CSF. C) Number of shared hits between common proteins and AD related proteins. D) STRING map shows the functional association based on the string database indicating the interactome of commonly shared proteins in saliva and CSF with AD. E) Volcano plots showing differential expression in saliva and F) CSF between AD and CN. G) Abundance rank dot plots for saliva and H) CSF shows the range of expression levels for the differentially expressed proteins. I) STRING map shows the interaction of differentially expressed proteins in saliva and J) in CSF. In the STRING map, the pink line represents the known interaction that is experimentally determined, blue line represents the known interaction from curated databases, green line represents predicted interaction due to gene neighborhood, red line represents prediction due to gene fusions and dark blue line represents prediction due to gene co-occurrence.
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    Image Search Results


    Shotgun proteomics to compare saliva and CSF and correlation analysis of differentially expressed genes in saliva. A) GO Biological pathways for salivary proteins. B) Number of shared proteins between saliva and CSF. C) Number of shared hits between common proteins and AD related proteins. D) STRING map shows the functional association based on the string database indicating the interactome of commonly shared proteins in saliva and CSF with AD. E) Volcano plots showing differential expression in saliva and F) CSF between AD and CN. G) Abundance rank dot plots for saliva and H) CSF shows the range of expression levels for the differentially expressed proteins. I) STRING map shows the interaction of differentially expressed proteins in saliva and J) in CSF. In the STRING map, the pink line represents the known interaction that is experimentally determined, blue line represents the known interaction from curated databases, green line represents predicted interaction due to gene neighborhood, red line represents prediction due to gene fusions and dark blue line represents prediction due to gene co-occurrence.

    Journal: Journal of Alzheimer's Disease Reports

    Article Title: Salivary Proteomics Identifies Transthyretin as a Biomarker of Early Dementia Conversion

    doi: 10.3233/ADR-210056

    Figure Lengend Snippet: Shotgun proteomics to compare saliva and CSF and correlation analysis of differentially expressed genes in saliva. A) GO Biological pathways for salivary proteins. B) Number of shared proteins between saliva and CSF. C) Number of shared hits between common proteins and AD related proteins. D) STRING map shows the functional association based on the string database indicating the interactome of commonly shared proteins in saliva and CSF with AD. E) Volcano plots showing differential expression in saliva and F) CSF between AD and CN. G) Abundance rank dot plots for saliva and H) CSF shows the range of expression levels for the differentially expressed proteins. I) STRING map shows the interaction of differentially expressed proteins in saliva and J) in CSF. In the STRING map, the pink line represents the known interaction that is experimentally determined, blue line represents the known interaction from curated databases, green line represents predicted interaction due to gene neighborhood, red line represents prediction due to gene fusions and dark blue line represents prediction due to gene co-occurrence.

    Article Snippet: CSF and saliva proteome from AD patients and age-matched control subjects were investigated using the open-source MaxQuant Perseus proteomics analysis software; protein expression variability within the clinical group was analyzed using homogeneity of variance.

    Techniques: Functional Assay, Quantitative Proteomics, Expressing

    Journal: The EMBO Journal

    Article Title: An optimized quantitative proteomics method establishes the cell type‐resolved mouse brain secretome

    doi: 10.15252/embj.2020105693

    Figure Lengend Snippet:

    Article Snippet: The results of the MaxQuant analysis were used to generate DIA spectral libraries of proteins in Spectronaut Pulsar X (Biognosys).

    Techniques: Cell Culture, Mouse Assay, Sandwich ELISA, Enzyme-linked Immunosorbent Assay, Software, Mass Spectrometry